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| Team | P | W | D | L | F | A | GD | PTS | |
| 1 | Kawasaki FrontaleKawasaki | 30 | 24 | 3 | 3 | 79 | 25 | 54 | 75 |
| 2 | Gamba OsakaGamba Osaka | 31 | 18 | 5 | 8 | 42 | 39 | 3 | 59 |
| 3 | Nagoya GrampusNagoya Grampus | 31 | 17 | 5 | 9 | 43 | 28 | 15 | 56 |
| 4 | Kashima AntlersKashima Antlers | 32 | 17 | 4 | 11 | 52 | 43 | 9 | 55 |
| 5 | Cerezo OsakaCerezo | 30 | 17 | 4 | 9 | 41 | 33 | 8 | 55 |
| 6 | FC Tokyo | 32 | 15 | 6 | 11 | 45 | 42 | 3 | 51 |
| 7 | Sanfrecce HiroshimaHiroshima | 31 | 13 | 9 | 9 | 46 | 34 | 12 | 48 |
| 8 | Yokohama F MarinosYokohama | 33 | 14 | 5 | 14 | 68 | 56 | 12 | 47 |
| 9 | Urawa Red DiamondsUrawa | 31 | 13 | 6 | 12 | 42 | 51 | -9 | 45 |
| 10 | Kashiwa ReysolReysol | 28 | 13 | 5 | 10 | 54 | 41 | 13 | 44 |
| 11 | Oita Trinita | 29 | 10 | 7 | 12 | 30 | 38 | -8 | 37 |
| 12 | Vissel KobeVissel Kobe | 33 | 9 | 9 | 15 | 50 | 58 | -8 | 36 |
| 13 | Consadole SapporoConsadole | 31 | 9 | 8 | 14 | 43 | 54 | -11 | 35 |
| 14 | Sagan Tosu | 30 | 6 | 12 | 12 | 31 | 38 | -7 | 30 |
| 15 | Yokohama FCYokohama FC | 30 | 8 | 4 | 18 | 34 | 56 | -22 | 28 |
| 16 | Shonan BellmareShonan Bellmare | 30 | 6 | 7 | 17 | 27 | 44 | -17 | 25 |
| 17 | Shimizu S-PulseShimizu S-Pulse | 30 | 6 | 6 | 18 | 42 | 63 | -21 | 24 |
| 18 | Vegalta SendaiVegalta Sendai | 30 | 4 | 9 | 17 | 31 | 57 | -26 | 21 |
| Team | P | W | D | L | F | A | GD | PTS | |
| 1 | Newport CountyNewport | 13 | 9 | 2 | 2 | 21 | 11 | 10 | 29 |
| 2 | Cheltenham TownCheltenham | 14 | 8 | 2 | 4 | 22 | 12 | 10 | 26 |
| 3 | Cambridge UnitedCambridge | 13 | 7 | 4 | 2 | 26 | 10 | 16 | 25 |
| 4 | Forest Green RoversForest Green | 14 | 7 | 4 | 3 | 19 | 13 | 6 | 25 |
| 5 | Exeter CityExeter | 14 | 6 | 6 | 2 | 26 | 17 | 9 | 24 |
| 6 | Leyton Orient | 15 | 7 | 3 | 5 | 24 | 17 | 7 | 24 |
| 7 | Carlisle UnitedCarlisle | 14 | 7 | 2 | 5 | 19 | 15 | 4 | 23 |
| 8 | Salford City | 13 | 6 | 4 | 3 | 21 | 11 | 10 | 22 |
| 9 | Bolton WanderersBolton | 15 | 6 | 4 | 5 | 17 | 18 | -1 | 22 |
| 10 | Tranmere RoversTranmere | 14 | 6 | 3 | 5 | 17 | 15 | 2 | 21 |
| 11 | Colchester UnitedColchester | 13 | 5 | 5 | 3 | 20 | 20 | 0 | 20 |
| 12 | Harrogate TownHarrogate | 14 | 5 | 4 | 5 | 15 | 14 | 1 | 19 |
| 13 | Port Vale | 15 | 6 | 1 | 8 | 18 | 18 | 0 | 19 |
| 14 | Morecambe | 14 | 5 | 4 | 5 | 17 | 25 | -8 | 19 |
| 15 | Crawley TownCrawley | 14 | 5 | 3 | 6 | 19 | 18 | 1 | 18 |
| 16 | Walsall | 14 | 3 | 8 | 3 | 13 | 16 | -3 | 17 |
| 17 | Oldham AthleticOldham | 14 | 5 | 2 | 7 | 21 | 27 | -6 | 17 |
| 18 | Grimsby Town | 12 | 4 | 3 | 5 | 11 | 18 | -7 | 15 |
| 19 | Barrow | 14 | 2 | 7 | 5 | 20 | 22 | -2 | 13 |
| 20 | Bradford CityBradford | 13 | 3 | 4 | 6 | 13 | 17 | -4 | 13 |
| 21 | Stevenage | 14 | 2 | 5 | 7 | 10 | 15 | -5 | 11 |
| 22 | Mansfield TownMansfield | 14 | 1 | 8 | 5 | 13 | 19 | -6 | 11 |
| 23 | Scunthorpe UnitedScunthorpe | 12 | 3 | 2 | 7 | 8 | 19 | -11 | 11 |
| 24 | Southend UnitedSouthend | 14 | 1 | 2 | 11 | 6 | 29 | -23 | 5 |
