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| Team | P | W | D | L | F | A | GD | PTS | |
| 1 | Zenit St PetersburgZenit | 21 | 12 | 6 | 3 | 46 | 19 | 27 | 42 |
| 2 | Spartak Moscow | 21 | 11 | 5 | 5 | 39 | 24 | 15 | 38 |
| 3 | CSKA MoscowCSKA | 20 | 11 | 4 | 5 | 35 | 19 | 16 | 37 |
| 4 | Sochi | 21 | 10 | 7 | 4 | 32 | 22 | 10 | 37 |
| 5 | Dynamo Moscow | 21 | 11 | 3 | 7 | 28 | 22 | 6 | 36 |
| 6 | Rubin Kazan | 21 | 10 | 4 | 7 | 28 | 26 | 2 | 34 |
| 7 | Lokomotiv MoscowLokomotiv | 21 | 10 | 4 | 7 | 26 | 25 | 1 | 34 |
| 8 | FC KrasnodarKrasnodar | 21 | 9 | 4 | 8 | 38 | 27 | 11 | 31 |
| 9 | RostovRostov | 20 | 9 | 4 | 7 | 25 | 22 | 3 | 31 |
| 10 | KhimkiKhimki | 20 | 8 | 5 | 7 | 26 | 29 | -3 | 29 |
| 11 | Akhmat GroznyAkhmat Grozny | 21 | 7 | 5 | 9 | 20 | 25 | -5 | 26 |
| 12 | Ural YekaterinburgUral | 21 | 4 | 11 | 6 | 18 | 25 | -7 | 23 |
| 13 | Rotor VolgogradRotor | 21 | 4 | 6 | 11 | 12 | 31 | -19 | 18 |
| 14 | FC UfaUfa | 21 | 3 | 5 | 13 | 15 | 33 | -18 | 14 |
| 15 | Arsenal TulaArsenal Tula | 21 | 3 | 5 | 13 | 17 | 37 | -20 | 14 |
| 16 | FC TambovTambov | 20 | 3 | 4 | 13 | 14 | 33 | -19 | 13 |
| Team | P | W | D | L | F | A | GD | PTS | |
| 1 | Hull City | 35 | 20 | 5 | 10 | 59 | 29 | 30 | 65 |
| 2 | Peterborough UnitedPeterborough | 33 | 19 | 5 | 9 | 53 | 31 | 22 | 62 |
| 3 | Lincoln CityLincoln | 33 | 18 | 7 | 8 | 52 | 32 | 20 | 61 |
| 4 | Sunderland | 33 | 16 | 12 | 5 | 51 | 26 | 25 | 60 |
| 5 | Doncaster RoversDoncaster | 31 | 17 | 4 | 10 | 51 | 39 | 12 | 55 |
| 6 | Portsmouth | 33 | 15 | 7 | 11 | 49 | 36 | 13 | 52 |
| 7 | Ipswich TownIpswich | 32 | 15 | 6 | 11 | 37 | 33 | 4 | 51 |
| 8 | Charlton AthleticCharlton | 34 | 14 | 9 | 11 | 48 | 45 | 3 | 51 |
| 9 | Oxford UnitedOxford Utd | 32 | 14 | 8 | 10 | 46 | 37 | 9 | 50 |
| 10 | Accrington StanleyAccrington | 32 | 14 | 8 | 10 | 44 | 38 | 6 | 50 |
| 11 | Blackpool | 30 | 14 | 6 | 10 | 36 | 28 | 8 | 48 |
| 12 | Crewe AlexandraCrewe | 34 | 13 | 9 | 12 | 43 | 43 | 0 | 48 |
| 13 | Gillingham | 34 | 14 | 5 | 15 | 45 | 46 | -1 | 47 |
| 14 | Fleetwood TownFleetwood | 34 | 12 | 10 | 12 | 39 | 30 | 9 | 46 |
| 15 | Plymouth ArgylePlymouth | 34 | 12 | 9 | 13 | 44 | 55 | -11 | 45 |
| 16 | MK Dons | 34 | 11 | 9 | 14 | 47 | 48 | -1 | 42 |
| 17 | Shrewsbury TownShrewsbury | 31 | 10 | 11 | 10 | 35 | 36 | -1 | 41 |
| 18 | Burton Albion | 32 | 10 | 7 | 15 | 40 | 56 | -16 | 37 |
| 19 | Bristol Rovers | 33 | 9 | 6 | 18 | 34 | 53 | -19 | 33 |
| 20 | Wigan AthleticWigan | 34 | 9 | 6 | 19 | 37 | 60 | -23 | 33 |
| 21 | Northampton TownNorthampton | 34 | 8 | 8 | 18 | 31 | 52 | -21 | 32 |
| 22 | Swindon TownSwindon | 34 | 9 | 4 | 21 | 40 | 62 | -22 | 31 |
| 23 | AFC Wimbledon | 32 | 7 | 9 | 16 | 32 | 56 | -24 | 30 |
| 24 | Rochdale | 34 | 6 | 10 | 18 | 41 | 63 | -22 | 28 |
